Detailed information of SNP:
|
SNP ID:
sf1216550040(Gbrowse)
Chromosome: chr12 Position: 16550040 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 93.41% | 6.59% |
| All Indica | 794 | 92.07% | 7.93% |
| All Japonica | 487 | 95.48% | 4.52% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 209 | 80.86% | 19.14% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 84 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216550040 | G->T | INTERGENIC | None |