Detailed information of SNP:
|
SNP ID:
sf1216554858(Gbrowse)
Chromosome: chr12 Position: 16554858 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.81% | 8.19% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 495 | 94.95% | 5.05% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216554858 | G->A | INTERGENIC | None |