Detailed information of SNP:
|
SNP ID:
sf1216556231(Gbrowse)
Chromosome: chr12 Position: 16556231 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 89.57% | 10.43% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216556231 | T->C | INTERGENIC | None |