Detailed information of SNP:
|
SNP ID:
sf1216558019(Gbrowse)
Chromosome: chr12 Position: 16558019 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.78% | 39.22% |
| All Indica | 797 | 68.88% | 31.12% |
| All Japonica | 497 | 40.85% | 59.15% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 212 | 44.81% | 55.19% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 29.55% | 70.45% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216558019 | T->C | INTERGENIC | None |