Detailed information of SNP:



SNP ID: sf1216558251(Gbrowse)

Chromosome: chr12

Position: 16558251
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 92.14% 7.86%
All Indica795 94.34% 5.66%
All Japonica495 88.48% 11.52%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II209 80.38% 19.62%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 98.21% 1.79%
Tropical Japonica92 51.09% 48.91%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 85.71% 14.29%
Intermediate41 82.93% 17.07%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1216558251 C->T INTERGENIC None