Detailed information of SNP:
|
SNP ID:
sf1216562642(Gbrowse)
Chromosome: chr12 Position: 16562642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 95.63% | 4.37% |
| All Indica | 780 | 95.64% | 4.36% |
| All Japonica | 474 | 95.57% | 4.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 196 | 83.16% | 16.84% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 72 | 72.22% | 27.78% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216562642 | G->A | LOC_Os12g28065(LOC_Os12g28065.1) | UTR_3_PRIME |