Detailed information of SNP:
|
SNP ID:
sf1216564430(Gbrowse)
Chromosome: chr12 Position: 16564430 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 82.75% | 17.25% |
| All Indica | 772 | 74.22% | 25.78% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 88.59% | 11.41% |
| Indica II | 208 | 47.60% | 52.40% |
| Indica Intermediate | 196 | 75.51% | 24.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216564430 | A->G | INTERGENIC | None |