Detailed information of SNP:
|
SNP ID:
sf1216564832(Gbrowse)
Chromosome: chr12 Position: 16564832 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 94.15% | 5.85% |
| All Indica | 788 | 94.16% | 5.84% |
| All Japonica | 489 | 95.71% | 4.29% |
| Aus | 39 | 87.18% | 12.82% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 204 | 82.35% | 17.65% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 78.16% | 21.84% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216564832 | T->C | INTERGENIC | None |