Detailed information of SNP:
|
SNP ID:
sf1216565472(Gbrowse)
Chromosome: chr12 Position: 16565472 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 94.16% | 5.84% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 485 | 86.80% | 13.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 327 | 85.93% | 14.07% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216565472 | G->A | INTERGENIC | None |