Detailed information of SNP:
|
SNP ID:
sf1216565731(Gbrowse)
Chromosome: chr12 Position: 16565731 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 94.59% | 5.41% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 483 | 85.92% | 14.08% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 84.92% | 15.08% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216565731 | G->A | INTERGENIC | None |