Detailed information of SNP:
|
SNP ID:
sf1216566579(Gbrowse)
Chromosome: chr12 Position: 16566579 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 77.72% | 22.28% |
| All Indica | 795 | 97.61% | 2.39% |
| All Japonica | 496 | 41.53% | 58.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216566579 | A->G | INTERGENIC | None |