Detailed information of SNP:
|
SNP ID:
sf1216580099(Gbrowse)
Chromosome: chr12 Position: 16580099 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 77.27% | 22.73% |
| All Indica | 795 | 96.98% | 3.02% |
| All Japonica | 495 | 41.01% | 58.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 334 | 23.05% | 76.95% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216580099 | T->C | LOC_Os12g28090(LOC_Os12g28090.1) | UTR_5_PRIME |