Detailed information of SNP:
|
SNP ID:
sf1216582860(Gbrowse)
Chromosome: chr12 Position: 16582860 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.68% | 19.32% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 496 | 72.38% | 27.62% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216582860 | C->A | INTERGENIC | None |