Detailed information of SNP:
|
SNP ID:
sf1216586519(Gbrowse)
Chromosome: chr12 Position: 16586519 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 69.90% | 30.10% |
| All Indica | 792 | 89.77% | 10.23% |
| All Japonica | 497 | 33.00% | 67.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 90.84% | 9.16% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216586519 | T->C | LOC_Os12g28100(LOC_Os12g28100.1) | UTR_3_PRIME |