Detailed information of SNP:
SNP ID:
sf1216590696(Gbrowse)
Chromosome: chr12 Position: 16590696 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 91.47% | 8.53% |
All Indica | 799 | 92.62% | 7.38% |
All Japonica | 497 | 89.74% | 10.26% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 74.18% | 25.82% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 47.87% | 52.13% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1216590696 | T->C | LOC_Os12g28100(LOC_Os12g28100.1) | INTRON |