Detailed information of SNP:
|
SNP ID:
sf1216590877(Gbrowse)
Chromosome: chr12 Position: 16590877 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 88.62% | 11.38% |
| All Indica | 797 | 92.85% | 7.15% |
| All Japonica | 477 | 81.34% | 18.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 324 | 92.90% | 7.10% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 60 | 86.67% | 13.33% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216590877 | A->G | LOC_Os12g28100(LOC_Os12g28100.1) | INTRON |