Detailed information of SNP:
|
SNP ID:
sf1216592935(Gbrowse)
Chromosome: chr12 Position: 16592935 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1335 | 88.01% | 11.99% |
| All Indica | 751 | 91.61% | 8.39% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 39 | 84.62% | 15.38% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 172 | 83.72% | 16.28% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 35 | 74.29% | 25.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216592935 | T->C | LOC_Os12g28100(LOC_Os12g28100.1) | SNPs that introduce initiation codons |