Detailed information of SNP:
|
SNP ID:
sf1216593549(Gbrowse)
Chromosome: chr12 Position: 16593549 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.82% | 8.18% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216593549 | G->A | INTERGENIC | None |