Detailed information of SNP:
|
SNP ID:
sf1216599773(Gbrowse)
Chromosome: chr12 Position: 16599773 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.81% | 7.19% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216599773 | G->A | INTERGENIC | None |