Detailed information of SNP:



SNP ID: sf1216644965(Gbrowse)

Chromosome: chr12

Position: 16644965
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1369 94.74% 5.26%
All Indica780 98.21% 1.79%
All Japonica478 91.42% 8.58%
Aus59 88.14% 11.86%
Indica I361 97.23% 2.77%
Indica II210 100.00% 0.00%
Indica Intermediate209 98.09% 1.91%
Temperate Japonica329 99.39% 0.61%
Tropical Japonica85 58.82% 41.18%
Japonica Intermediate64 93.75% 6.25%
Group VI/Aromatic12 41.67% 58.33%
Intermediate40 92.50% 7.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1216644965 G->C LOC_Os12g28200(LOC_Os12g28200.1) Synonymous