Detailed information of SNP:
|
SNP ID:
sf1216670362(Gbrowse)
Chromosome: chr12 Position: 16670362 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 74.25% | 25.75% |
| All Indica | 795 | 96.60% | 3.40% |
| All Japonica | 490 | 33.88% | 66.12% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 334 | 18.56% | 81.44% |
| Tropical Japonica | 88 | 81.82% | 18.18% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216670362 | G->T | INTERGENIC | None |