Detailed information of SNP:
|
SNP ID:
sf1216672021(Gbrowse)
Chromosome: chr12 Position: 16672021 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 72.85% | 27.15% |
| All Indica | 789 | 96.32% | 3.68% |
| All Japonica | 485 | 32.16% | 67.84% |
| Aus | 59 | 89.83% | 10.17% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 82 | 74.39% | 25.61% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216672021 | T->C | LOC_Os12g28240(LOC_Os12g28240.1) | Synonymous |