Detailed information of SNP:
|
SNP ID:
sf1216673246(Gbrowse)
Chromosome: chr12 Position: 16673246 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 63.89% | 36.11% |
| All Indica | 788 | 95.05% | 4.95% |
| All Japonica | 493 | 11.16% | 88.84% |
| Aus | 61 | 78.69% | 21.31% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216673246 | C->T | LOC_Os12g28240(LOC_Os12g28240.1) | INTRON |