Detailed information of SNP:
|
SNP ID:
sf1216674150(Gbrowse)
Chromosome: chr12 Position: 16674150 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 54.72% | 45.28% |
| All Indica | 787 | 88.95% | 11.05% |
| All Japonica | 491 | 5.30% | 94.70% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 90 | 21.11% | 78.89% |
| Japonica Intermediate | 66 | 7.58% | 92.42% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216674150 | A->G | INTERGENIC | None |