Detailed information of SNP:
|
SNP ID:
sf1216674739(Gbrowse)
Chromosome: chr12 Position: 16674739 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 62.88% | 37.12% |
| All Indica | 786 | 89.82% | 10.18% |
| All Japonica | 491 | 26.48% | 73.52% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 205 | 80.98% | 19.02% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 89 | 46.07% | 53.93% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216674739 | C->G | INTERGENIC | None |