Detailed information of SNP:
|
SNP ID:
sf1216675911(Gbrowse)
Chromosome: chr12 Position: 16675911 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 51.89% | 48.11% |
| All Indica | 791 | 85.71% | 14.29% |
| All Japonica | 494 | 4.05% | 95.95% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 209 | 81.82% | 18.18% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216675911 | T->C | INTERGENIC | None |