Detailed information of SNP:
|
SNP ID:
sf1216696271(Gbrowse)
Chromosome: chr12 Position: 16696271 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.42% | 9.58% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216696271 | C->T | INTERGENIC | None |