Detailed information of SNP:
|
SNP ID:
sf1216696284(Gbrowse)
Chromosome: chr12 Position: 16696284 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.12% | 45.88% |
| All Indica | 799 | 77.10% | 22.90% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216696284 | G->T | INTERGENIC | None |