Detailed information of SNP:
|
SNP ID:
sf1216697157(Gbrowse)
Chromosome: chr12 Position: 16697157 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 82.79% | 17.21% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216697157 | G->C | LOC_Os12g28260(LOC_Os12g28260.1) | Synonymous |