Detailed information of SNP:
|
SNP ID:
sf1216699813(Gbrowse)
Chromosome: chr12 Position: 16699813 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 96.23% | 3.77% |
| All Indica | 786 | 98.35% | 1.65% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216699813 | G->A | LOC_Os12g28270(LOC_Os12g28270.2) | UTR_3_PRIME |
| sf1216699813 | G->A | LOC_Os12g28260(LOC_Os12g28260.1) | Synonymous |