Detailed information of SNP:
|
SNP ID:
sf1216712971(Gbrowse)
Chromosome: chr12 Position: 16712971 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 56.96% | 43.04% |
| All Indica | 791 | 81.54% | 18.46% |
| All Japonica | 491 | 13.65% | 86.35% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 78.23% | 21.77% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 331 | 1.81% | 98.19% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216712971 | G->C | INTERGENIC | None |