Detailed information of SNP:
|
SNP ID:
sf1216714614(Gbrowse)
Chromosome: chr12 Position: 16714614 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 85.46% | 14.54% |
| All Indica | 770 | 95.45% | 4.55% |
| All Japonica | 477 | 69.18% | 30.82% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 361 | 94.46% | 5.54% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 201 | 94.53% | 5.47% |
| Temperate Japonica | 331 | 76.74% | 23.26% |
| Tropical Japonica | 81 | 62.96% | 37.04% |
| Japonica Intermediate | 65 | 38.46% | 61.54% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216714614 | T->C | INTERGENIC | None |