Detailed information of SNP:
|
SNP ID:
sf1216717712(Gbrowse)
Chromosome: chr12 Position: 16717712 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 54.54% | 45.46% |
| All Indica | 757 | 29.46% | 70.54% |
| All Japonica | 490 | 95.71% | 4.29% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 346 | 31.50% | 68.50% |
| Indica II | 206 | 24.27% | 75.73% |
| Indica Intermediate | 205 | 31.22% | 68.78% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 81.61% | 18.39% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216717712 | A->G | INTERGENIC | None |