Detailed information of SNP:
SNP ID:
sf1216718330(Gbrowse)
Chromosome: chr12 Position: 16718330 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1346 | 56.32% | 43.68% |
All Indica | 744 | 31.99% | 68.01% |
All Japonica | 487 | 96.30% | 3.70% |
Aus | 64 | 28.12% | 71.88% |
Indica I | 343 | 36.44% | 63.56% |
Indica II | 202 | 23.76% | 76.24% |
Indica Intermediate | 199 | 32.66% | 67.34% |
Temperate Japonica | 333 | 99.40% | 0.60% |
Tropical Japonica | 86 | 82.56% | 17.44% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 11 | 63.64% | 36.36% |
Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1216718330 | A->G | INTERGENIC | None |