Detailed information of SNP:
|
SNP ID:
sf1216718330(Gbrowse)
Chromosome: chr12 Position: 16718330 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1346 | 56.32% | 43.68% |
| All Indica | 744 | 31.99% | 68.01% |
| All Japonica | 487 | 96.30% | 3.70% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 343 | 36.44% | 63.56% |
| Indica II | 202 | 23.76% | 76.24% |
| Indica Intermediate | 199 | 32.66% | 67.34% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 82.56% | 17.44% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216718330 | A->G | INTERGENIC | None |