Detailed information of SNP:
|
SNP ID:
sf1216722429(Gbrowse)
Chromosome: chr12 Position: 16722429 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 52.99% | 47.01% |
| All Indica | 754 | 79.97% | 20.03% |
| All Japonica | 487 | 9.03% | 90.97% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 352 | 78.12% | 21.88% |
| Indica II | 202 | 81.19% | 18.81% |
| Indica Intermediate | 200 | 82.00% | 18.00% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 86 | 40.70% | 59.30% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722429 | C->T | LOC_Os12g28290(LOC_Os12g28290.1) | Non-Synonymous SNP |