Detailed information of SNP:
|
SNP ID:
sf1216722454(Gbrowse)
Chromosome: chr12 Position: 16722454 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 63.18% | 36.82% |
| All Indica | 786 | 91.86% | 8.14% |
| All Japonica | 490 | 12.86% | 87.14% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 367 | 91.55% | 8.45% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 88 | 56.82% | 43.18% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722454 | T->G | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |