Detailed information of SNP:
|
SNP ID:
sf1216722496(Gbrowse)
Chromosome: chr12 Position: 16722496 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1267 | 70.24% | 29.76% |
| All Indica | 671 | 49.78% | 50.22% |
| All Japonica | 487 | 98.77% | 1.23% |
| Aus | 62 | 54.84% | 45.16% |
| Indica I | 309 | 55.66% | 44.34% |
| Indica II | 179 | 47.49% | 52.51% |
| Indica Intermediate | 183 | 42.08% | 57.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 95.35% | 4.65% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722496 | T->C | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |