Detailed information of SNP:
|
SNP ID:
sf1216722598(Gbrowse)
Chromosome: chr12 Position: 16722598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1222 | 90.43% | 9.57% |
| All Indica | 628 | 83.76% | 16.24% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 55 | 78.18% | 21.82% |
| Indica I | 295 | 80.68% | 19.32% |
| Indica II | 166 | 88.55% | 11.45% |
| Indica Intermediate | 167 | 84.43% | 15.57% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722598 | C->T | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |