Detailed information of SNP:
|
SNP ID:
sf1216722754(Gbrowse)
Chromosome: chr12 Position: 16722754 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 94.17% | 5.83% |
| All Indica | 789 | 91.25% | 8.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722754 | G->A | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |