Detailed information of SNP:
|
SNP ID:
sf1216722915(Gbrowse)
Chromosome: chr12 Position: 16722915 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 91.87% | 8.13% |
| All Indica | 787 | 87.55% | 12.45% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 370 | 86.76% | 13.24% |
| Indica II | 207 | 82.61% | 17.39% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722915 | G->A | LOC_Os12g28290(LOC_Os12g28290.1) | Non-Synonymous SNP |