Detailed information of SNP:
|
SNP ID:
sf1216722928(Gbrowse)
Chromosome: chr12 Position: 16722928 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 95.32% | 4.68% |
| All Indica | 790 | 93.42% | 6.58% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216722928 | G->A | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |