Detailed information of SNP:
|
SNP ID:
sf1216723045(Gbrowse)
Chromosome: chr12 Position: 16723045 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 59.78% | 40.22% |
| All Indica | 775 | 86.19% | 13.81% |
| All Japonica | 490 | 11.84% | 88.16% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 361 | 86.43% | 13.57% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216723045 | C->T | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |