Detailed information of SNP:
|
SNP ID:
sf1216723332(Gbrowse)
Chromosome: chr12 Position: 16723332 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1260 | 80.63% | 19.37% |
| All Indica | 670 | 68.81% | 31.19% |
| All Japonica | 486 | 98.15% | 1.85% |
| Aus | 56 | 62.50% | 37.50% |
| Indica I | 308 | 70.45% | 29.55% |
| Indica II | 181 | 66.30% | 33.70% |
| Indica Intermediate | 181 | 68.51% | 31.49% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 85 | 92.94% | 7.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216723332 | C->T | LOC_Os12g28290(LOC_Os12g28290.1) | Non-Synonymous SNP |