Detailed information of SNP:
|
SNP ID:
sf1216723833(Gbrowse)
Chromosome: chr12 Position: 16723833 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 63.35% | 36.65% |
| All Indica | 763 | 89.91% | 10.09% |
| All Japonica | 492 | 16.26% | 83.74% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 351 | 94.59% | 5.41% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 91 | 65.93% | 34.07% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216723833 | T->C | LOC_Os12g28290(LOC_Os12g28290.1) | Non-Synonymous SNP |