Detailed information of SNP:
|
SNP ID:
sf1216723846(Gbrowse)
Chromosome: chr12 Position: 16723846 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1322 | 91.83% | 8.17% |
| All Indica | 724 | 87.85% | 12.15% |
| All Japonica | 488 | 97.75% | 2.25% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 327 | 86.85% | 13.15% |
| Indica II | 199 | 90.95% | 9.05% |
| Indica Intermediate | 198 | 86.36% | 13.64% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216723846 | A->G | LOC_Os12g28290(LOC_Os12g28290.1) | Synonymous |