Detailed information of SNP:
|
SNP ID:
sf1216741441(Gbrowse)
Chromosome: chr12 Position: 16741441 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1295 | 58.30% | 41.70% |
| All Indica | 711 | 85.65% | 14.35% |
| All Japonica | 476 | 13.45% | 86.55% |
| Aus | 58 | 82.76% | 17.24% |
| Indica I | 326 | 87.42% | 12.58% |
| Indica II | 197 | 87.31% | 12.69% |
| Indica Intermediate | 188 | 80.85% | 19.15% |
| Temperate Japonica | 326 | 2.15% | 97.85% |
| Tropical Japonica | 84 | 54.76% | 45.24% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216741441 | C->T | INTERGENIC | None |