Detailed information of SNP:
|
SNP ID:
sf1216751114(Gbrowse)
Chromosome: chr12 Position: 16751114 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 86.36% | 13.64% |
| All Indica | 770 | 82.73% | 17.27% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 360 | 78.61% | 21.39% |
| Indica II | 206 | 87.38% | 12.62% |
| Indica Intermediate | 204 | 85.29% | 14.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216751114 | A->G | LOC_Os12g28340(LOC_Os12g28340.1) | INTRON |