Detailed information of SNP:
|
SNP ID:
sf1216751192(Gbrowse)
Chromosome: chr12 Position: 16751192 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 73.97% | 26.03% |
| All Indica | 753 | 66.53% | 33.47% |
| All Japonica | 491 | 91.65% | 8.35% |
| Aus | 65 | 40.00% | 60.00% |
| Indica I | 351 | 62.68% | 37.32% |
| Indica II | 200 | 68.50% | 31.50% |
| Indica Intermediate | 202 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 88 | 68.18% | 31.82% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216751192 | A->G | LOC_Os12g28340(LOC_Os12g28340.1) | INTRON |