Detailed information of SNP:
|
SNP ID:
sf1216753117(Gbrowse)
Chromosome: chr12 Position: 16753117 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 95.05% | 4.95% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216753117 | T->C | LOC_Os12g28340(LOC_Os12g28340.1) | Non-Synonymous SNP |