Detailed information of SNP:
|
SNP ID:
sf1216753548(Gbrowse)
Chromosome: chr12 Position: 16753548 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 85.77% | 14.23% |
| All Indica | 757 | 87.58% | 12.42% |
| All Japonica | 494 | 88.46% | 11.54% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 356 | 87.08% | 12.92% |
| Indica II | 204 | 87.25% | 12.75% |
| Indica Intermediate | 197 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216753548 | C->T | LOC_Os12g28340(LOC_Os12g28340.1) | Non-Synonymous SNP |